Joachim Niehren

Current Research Activities

• Algorithms for processing dynamic linked data (Links). We are studying the logical queries and and query-based transformations for data streams. Our approaches are based on tree automata, logic, and database theory.
• Prediction algorithms for reaction networks in systems biology (BioComputing).

Publications

• All Databases Query Induction Stream Processing XML Tree Automata Tree Transducers Programming Languages Systems Biology Constraints Computational Linguistics

Curriculum Vitae

• Curriculum Vitae

Programm Committees

• CMSB 2020 LATA 2019 WPTE 2019 (co-chair) WPTE 2018 (chair) BDA 2017 LPAR 2016 LATA 2015 STACS 2014 ...

Editorial Boards

• Fundamenta Informaticae

Cooperation Projects

• with Links
  • Headwork (2016-21, ANR)
  • Colis (2015-20, ANR)
  • Aggreg (2014-19, ANR, coordinator)
• with BioComputing
  • BestBioSurf (2018-2021, ERA CoBioTech, H2020)

Teaching

• Winter 2017/18: Foundations of Databases. Part of the masters Mocad on Information Extraction at the University of Lille 1.
• Summer 2017: Foundations of Data and Knowledge Bases. University of Cape Coast, Ghana, PhD summer school of the Academie without Borders.

Software

• Draw your reaction networks: "BioComputing's Network-Graph Tool"
• XML processing: QuiX Tools (XPath, XSLT, XSchematron, XProc, XQuery)
• Better queries for HAL: SmartHal