Joachim Niehren

Joachim Niehren

Inria Lille, France

Head of Links team of Inria and Cristal

Member of BioComputing team of Cristal

Current Research Activities

Algorithms for processing dynamic linked data (Links). We are studying the logical queries and and query-based transformations for data streams. Our approaches are based on tree automata, logic, and database theory.
Prediction algorithms for reaction networks in systems biology (BioComputing).

Publications

All Databases Query Induction Stream Processing XML Tree Automata Tree Transducers Programming Languages Systems Biology Constraints Computational Linguistics

Curriculum Vitae

Curriculum Vitae

Programm Committees

CMSB 2020 LATA 2019 WPTE 2018 (chair) BDA 2017 LPAR 2016 LATA 2015 STACS 2014 ...

Editorial Boards

Fundamenta Informaticae

Cooperation Projects

with Links
- Headwork (2016-21, ANR)
- Colis (2015-20, ANR)
- Aggreg (2014-19, ANR, coordinator)
with BioComputing
- BestBioSurf (2018-2021, ERA CoBioTech, H2020)

Teaching

Winter 2020/21: Foundations of Databases. Part of the masters Mocad on Information Extraction at the University of Lille.
Summer 2017: Foundations of Data and Knowledge Bases. University of Cape Coast, Ghana, PhD summer school of the Academie without Borders.

Software

Draw your reaction networks: "BioComputing's Network-Graph Tool"
XML processing: QuiX Tools (XPath, XSLT, XSchematron, XProc, XQuery)
Better queries for HAL: SmartHal